Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs4701519 chr5:26035255 T/C 1.61E-5 365 19.5 20.9 1.03 KM Plot
LIHC rs4727235 chr7:90306127 G/A 1.21E-5 361 14.32 18.6 20.27 KM Plot
LIHC rs4923850 chr15:40352278 C/T 1.29E-5 368 16.78 21.78 18.17 KM Plot
LIHC rs4923851 chr15:40352342 C/T 3.03E-5 365 16.98 21.93 18.17 KM Plot
LIHC rs4924414 chr15:40352615 A/T 1.31E-5 368 19.33 21.38 16.87 KM Plot
LIHC rs4938783 chr11:119979013 G/A 6.7E-12 366 19.5 20.33 0.9 KM Plot
LIHC rs55726586 chr5:145689657 C/A 6.79E-5 361 19.8 21.2 12.55 KM Plot
LIHC rs55765335 chr4:20855045 G/T 2.0E-6 362 20.9 20.7 11.33 KM Plot
LIHC rs55793750 chr14:73412199 A/T 2.52E-6 363 20.7 13.17 8.73 KM Plot
LIHC rs55993128 chr2:37128817 T/A 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs55999949 chr13:108899145 T/G 5.7E-5 363 20.7 17.63 6.8 KM Plot
LIHC rs56039748 chr2:49671247 T/C 0 357 19.4 21.3 0.75 KM Plot
LIHC rs56146201 chr14:73474632 A/G 6.13E-6 366 20.27 13.17 4.93 KM Plot
LIHC rs56186144 chr2:37129121 A/T 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs56307666 chr11:73553812 G/A 3.31E-6 368 19.5 20.48 1.87 KM Plot